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1

Synthetic Genomes

Zhang, Weimin, Mitchell, Leslie A., Bader, Joel S., Boeke, Jef D.

Journal:

Annual Review of Biochemistry

Year:

2020

File:

PDF, 609 KB

2020

2

Genome sequencing in microfabricated high-density picolitre reactors

Margulies, Marcel, Egholm, Michael, Altman, William E., Attiya, Said, Bader, Joel S., Bemben, Lisa A., Berka, Jan, Braverman, Michael S., Chen, Yi-Ju, Chen, Zhoutao, Dewell, Scott B., Du, Lei, Fierro,

Journal:

Year:

2005

Language:

english

File:

PDF, 364 KB

english, 2005

3

Effects of Ammonia on Growth and Survival of Recently Hatched Channel Catfish

Bader, Joel A., Grizzle, John M.

Journal:

Journal of Aquatic Animal Health

Year:

1992

Language:

english

File:

PDF, 781 KB

english, 1992

4

Rapid detection of columnaris disease in channel catfish (Ictalurus punctatus) with a new species-specific 16-S rRNA gene-based PCR primer for Flavobacterium columnare

Joel A Bader, Craig A Shoemaker, Phillip H Klesius

Journal:

Journal of Microbiological Methods

Year:

2003

Language:

english

File:

PDF, 218 KB

english, 2003

5

The effect of static pressure on the strength of inertial cavitation events

Bader, Kenneth B., Mobley, Joel, Church, Charles C., Gaitan, D. Felipe

Journal:

The Journal of the Acoustical Society of America

Year:

2012

Language:

english

File:

PDF, 749 KB

english, 2012

6

Determination of Phylogenetic Relationships of Flavobacterium psychrophilum ( Flexibacter psychrophilus ), Flavobacterium columnare ( Flexibacter columnaris ), and Flexibacter maritimus by Sequence Analysis of 16S Ribosomal RNA Genes Amplified by Polymerase Chain Reaction

Bader, Joel A., Shotts, Emmett B.

Journal:

Journal of Aquatic Animal Health

Year:

1998

Language:

english

File:

PDF, 129 KB

english, 1998

7

Methotrexate analogs. 26. Inhibition of dihydrofolate reductase and folylpolyglutamate synthetase activity and in vitro tumor cell growth by methotrexate and aminopterin analogs containing a basic amino acid side chain

Rosowsky, Andre, Freisheim, James H., Moran, Richard G., Solan, Vishnu C., Bader, Henry, Wright, Joel E., Radike-Smith, Mary

Journal:

Journal of Medicinal Chemistry

Year:

1986

Language:

english

File:

PDF, 926 KB

english, 1986

8

The effect of static pressure on the inertial cavitation threshold

Bader, Kenneth B., Raymond, Jason L., Mobley, Joel, Church, Charles C., Felipe Gaitan, D.

Journal:

The Journal of the Acoustical Society of America

Year:

2012

Language:

english

File:

PDF, 1.06 MB

english, 2012

9

A DNA Integrity Network in the Yeast Saccharomyces cerevisiae

Pan, Xuewen, Ye, Ping, Yuan, Daniel S., Wang, Xiaoling, Bader, Joel S., Boeke, Jef D.

Journal:

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

10

Angiogenesis Interactome and Time Course Microarray Data Reveal the Distinct Activation Patterns in Endothelial Cells

Chu, Liang-Hui, Lee, Esak, Bader, Joel S., Popel, Aleksander S., Roberts, David D.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.22 MB

english, 2014

11

E-cadherin is required for metastasis in multiple models of breast cancer

Padmanaban, Veena, Krol, Ilona, Suhail, Yasir, Szczerba, Barbara M., Aceto, Nicola, Bader, Joel S., Ewald, Andrew J.

Journal:

Year:

2019

Language:

english

File:

PDF, 37.25 MB

english, 2019

12

Between-tumor and within-tumor heterogeneity in invasive potential

Padmanaban, Veena, Tsehay, Yohannes, Cheung, Kevin J., Ewald, Andrew J., Bader, Joel S., Anderson, Alexander R.A.

Journal:

PLoS Computational Biology

Year:

2020

Language:

english

File:

PDF, 4.52 MB

english, 2020

13

Sharing emotions: determining filmsâ evoked emotional experience from their online reviews

Mokryn, Osnat, Bodoff, David, Bader, Nadim, Albo, Yael, Lanir, Joel

Journal:

Information Retrieval

Year:

2020

File:

PDF, 1.39 MB

2020

14

Differential transport of DNA by a rectified Brownian motion device

Richard W. Hammond, Joel S. Bader, Steven A. Henck, Michael W. Deem, Gregory A. McDermott, James M. Bustillo, Jonathan M. Rothberg

Journal:

ELECTROPHORESIS

Year:

2000

Language:

english

File:

PDF, 1.49 MB

english, 2000

15

Transient inflammatory response induced by apoptotic cells is an important mediator of melanoma cell engraftment and growth

Mariangela Correa, Joel Machado Jr., Célia R.W. Carneiro, João Bosco Pesquero, Michael Bader, Luiz R. Travassos, Roger Chammas, Miriam G. Jasiulionis

Journal:

International Journal of Cancer

Year:

2005

Language:

english

File:

PDF, 553 KB

english, 2005

16

Fluctuating charge force fields for aqueous solutions

Steven W. Rick, Steven J. Stuart, Joel S. Bader, B.J. Berne

Journal:

Journal of Molecular Liquids

Year:

1995

Language:

english

File:

PDF, 933 KB

english, 1995

17

Computer simulation of photochemically induced electron transfer

Joel S. Bader, David Chandler

Journal:

Chemical Physics Letters

Year:

1989

Language:

english

File:

PDF, 387 KB

english, 1989

18

Resolving the structure of interactomes with hierarchical agglomerative clustering

Yongjin Park, Joel S Bader

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 557 KB

english, 2011

19

Predicting functional associations from metabolism using bi-partite network algorithms

Balaji Veeramani, Joel S Bader

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 702 KB

english, 2010

20

Angiogenesis-Associated Crosstalk Between Collagens, CXC Chemokines, and Thrombospondin Domain-Containing Proteins

Corban G. Rivera, Joel S. Bader, Aleksander S. Popel

Journal:

Annals of Biomedical Engineering

Year:

2011

Language:

english

File:

PDF, 574 KB

english, 2011

21

Decoding transcriptional regulatory interactions

L. Angela Liu, Joel S. Bader

Journal:

Physica D: Nonlinear Phenomena

Year:

2006

Language:

english

File:

PDF, 804 KB

english, 2006

22

SHORT COMMUNICATION: Response to Dr Stephen Cooper's ‘On the use of metaphor to understand, explain, or rationalize redundant genes in yeast’

Xuewen Pan, Daniel Yuan, Ping Ye, Joel Bader, Jef D. Boeke

Journal:

FEMS Yeast Research

Year:

2008

Language:

english

File:

PDF, 54 KB

english, 2008

23

Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors

Margulies, Marcel, Egholm, Michael, Altman, William E., Attiya, Said, Bader, Joel S., Bemben, Lisa A., Berka, Jan, Braverman, Michael S., Chen, Yi-Ju, Chen, Zhoutao

Journal:

Year:

2006

Language:

english

File:

PDF, 84 KB

english, 2006

24

Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors

Margulies, Marcel, Egholm, Michael, Altman, William E., Attiya, Said, Bader, Joel S., Bemben, Lisa A., Berka, Jan, Braverman, Michael S., Chen, Yi-Ju, Chen, Zhoutao

Journal:

Year:

2006

Language:

english

File:

PDF, 96 KB

english, 2006

25

Human Proteinpedia enables sharing of human protein data

Mathivanan, Suresh, Ahmed, Mukhtar, Ahn, Natalie G, Alexandre, Hainard, Amanchy, Ramars, Andrews, Philip C, Bader, Joel S, Balgley, Brian M, Bantscheff, Marcus, Bennett, Keiryn L

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 374 KB

english, 2008

26

Gaining confidence in high-throughput protein interaction networks

Bader, Joel S, Chaudhuri, Amitabha, Rothberg, Jonathan M, Chant, John

Journal:

Nature Biotechnology

Year:

2003

Language:

english

File:

PDF, 282 KB

english, 2003

27

DNA Pooling: a tool for large-scale association studies

Sham, Pak, Bader, Joel S., Craig, Ian, O'Donovan, Michael, Owen, Michael

Journal:

Nature Reviews Genetics

Year:

2002

Language:

english

File:

PDF, 385 KB

english, 2002

28

Family-based association tests for quantitative traits using pooled DNA

Bader, Joel S, Sham, Pak

Journal:

European Journal of Human Genetics

Year:

2002

Language:

english

File:

PDF, 167 KB

english, 2002

29

5-Deaza-7-desmethylene analogues of 5,10-methylene-5,6,7,8-tetrahydrofolic acid and related compounds: Synthesis and in vitro biological activity

Andre Rosowsky, Henry Bader, Joel E. Wright, Richard G. Moran

Journal:

Journal of Heterocyclic Chemistry

Year:

1994

File:

PDF, 863 KB

1994

30

Gene synthesis demystified

Michael J. Czar, J. Christopher Anderson, Joel S. Bader, Jean Peccoud

Journal:

Trends in Biotechnology

Year:

2009

Language:

english

File:

PDF, 785 KB

english, 2009

31

Global synthetic-lethality analysis and yeast functional profiling

Siew Loon Ooi, Xuewen Pan, Brian D. Peyser, Ping Ye, Pamela B. Meluh, Daniel S. Yuan, Rafael A. Irizarry, Joel S. Bader, Forrest A. Spencer, Jef D. Boeke

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 192 KB

english, 2006

32

Efficient SNP-based tests of association for quantitative phenotypes using pooled DNA

Joel S. Bader, Aruna Bansal, Pak Sham

Journal:

Year:

2001

Language:

english

File:

PDF, 477 KB

english, 2001

33

165: Establishing a Framework to Infer Gene Regulatory Networks for Kidney Development

Luis F. Menezes, Klaus Piontek, Carlo Colantuoni, Scott Patterson, Joel Bader, Gregory G. Germino

Journal:

American Journal of Kidney Diseases

Year:

2008

Language:

english

File:

PDF, 200 KB

english, 2008

34

NeMo: Network Module identification in Cytoscape

Corban G Rivera, Rachit Vakil, Joel S Bader

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.20 MB

english, 2010

35

PreBIND and Textomy – mining the biomedical literature for protein-protein interactions using a support vector machine

Ian Donaldson, Joel Martin, Berry de Bruijn, Cheryl Wolting, Vicki Lay, Brigitte Tuekam, Shudong Zhang, Berivan Baskin, Gary D Bader, Katerina Michalickova, Tony Pawson, Christopher WV Hogue

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 574 KB

english, 2003

36

Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast

Ping Ye, Brian D Peyser, Forrest A Spencer, Joel S Bader

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 389 KB

english, 2005

37

Genetic interaction motif finding by expectation maximization – a novel statistical model for inferring gene modules from synthetic lethality

Yan Qi, Ping Ye, Joel S Bader

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 461 KB

english, 2005

38

Analytical approximations for the amplitude and period of a relaxation oscillator

Carmen Kut, Vahid Golkhou, Joel S Bader

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 679 KB

english, 2009

39

Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK

Lin, Yu-yi, Kiihl, Samara, Suhail, Yasir, Liu, Shang-Yun, Chou, Yi-hsuan, Kuang, Zheng, Lu, Jin-ying, Khor, Chin Ni, Lin, Chi-Long, Bader, Joel S.

Journal:

Year:

2012

Language:

english

File:

PDF, 683 KB

english, 2012

40

Polycythemia vera and arterial oxygen saturation

Richard A. Bader, Mortimer E. Bader, Joel L. Duberstein

Journal:

The American Journal of Medicine

Year:

1963

Language:

english

File:

PDF, 505 KB

english, 1963

41

Use of oxygen inhalation in evaluation of respiratory acidosis in patients with apparent metabolic alkalosis

Albert Miller, Alvin S. Teirstein, Joel Duberstein, E.Leslie Chusid, Mortimer E. Bader, Richard A. Bader

Journal:

The American Journal of Medicine

Year:

1968

Language:

english

File:

PDF, 688 KB

english, 1968

42

The effect of cutaneous injury on a reproducible immersion challenge model for Flavobacterium columnare infection in channel catfish (Ictalurus punctatus)

Joel A. Bader, Sarah A. Moore, Kenneth E. Nusbaum

Journal:

Year:

2006

Language:

english

File:

PDF, 664 KB

english, 2006

43

A DNA Integrity Network in the Yeast Saccharomyces cerevisiae

Xuewen Pan, Ping Ye, Daniel S. Yuan, Xiaoling Wang, Joel S. Bader, Jef D. Boeke

Journal:

Year:

2006

Language:

english

File:

PDF, 827 KB

english, 2006

44

Probing Nucleosome Function: A Highly Versatile Library of Synthetic Histone H3 and H4 Mutants

Junbiao Dai, Edel M. Hyland, Daniel S. Yuan, Hailiang Huang, Joel S. Bader, Jef D. Boeke

Journal:

Year:

2008

Language:

english

File:

PDF, 1.74 MB

english, 2008

45

Immune response induced by N-lauroylsarcosine extracted outer-membrane proteins of an isolate of Edwardsiella ictaluri in channel catfish

Joel A Bader, Craig A Shoemaker, Phillip H Klesius

Journal:

Fish & Shellfish Immunology

Year:

2004

Language:

english

File:

PDF, 278 KB

english, 2004

46

A Robust Toolkit for Functional Profiling of the Yeast Genome

Xuewen Pan, Daniel S. Yuan, Dong Xiang, Xiaoling Wang, Sharon Sookhai-Mahadeo, Joel S. Bader, Philip Hieter, Forrest Spencer, Jef D. Boeke

Journal:

Year:

2004

Language:

english

File:

PDF, 571 KB

english, 2004

47

GSVD Comparison of Patient-Matched Normal and Tumor aCGH Profiles Reveals Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival

Lee, Cheng H., Alpert, Benjamin O., Sankaranarayanan, Preethi, Alter, Orly, Bader, Joel S.

Journal:

Year:

2012

Language:

english

File:

PDF, 620 KB

english, 2012

48

Synthesis and Potent Antifolate Activity and Cytotoxicity of B-Ring Deaza Analogues of the Nonpolyglutamatable Dihydrofolate Reductase Inhibitor N α -(4-Amino-4-deoxypteroyl)- N δ -hemiphthaloyl- l -ornithine (PT523)

Rosowsky, Andre, Wright, Joel E., Vaidya, Chitra M., Bader, Henry, Forsch, Ronald A., Mota, Clara E., Pardo, Jorge, Chen, Cindy S., Chen, Ying-Nan

Journal:

Journal of Medicinal Chemistry

Year:

1998

Language:

english

File:

PDF, 176 KB

english, 1998

49

Quantum and classical relaxation rates from classical simulations

Bader, Joel S., Berne, B. J.

Journal:

The Journal of Chemical Physics

Year:

1994

Language:

english

File:

PDF, 987 KB

english, 1994

50

Novel Peptide-Specific Quantitative Structure–Activity Relationship (QSAR) Analysis Applied to Collagen IV Peptides with Antiangiogenic Activity

Rivera, Corban G., Rosca, Elena V., Pandey, Niranjan B., Koskimaki, Jacob E., Bader, Joel S., Popel, Aleksander S.

Journal:

Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 3.05 MB

english, 2011